-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3492

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42362.t1
Couldn't classify 81, 97
Couldn't classify 123, 369
Sorry, prediction GeneMark_model.111063_t fails validation.
(CTT)	 AG	81-97	GT	AGG
(CGA)	 AG	123-369	GT	GGG
-recovered GeneMark_model.111063_t, internal, 81, 97
-recovered GeneMark_model.111063_t, internal, 123, 369
Couldn't classify 81, 369
Couldn't classify 460, 657
Sorry, prediction snap_scaffold_3492-snap.1-T1 fails validation.
(CTT)	 AG	81-369	GT	GGG
(GCC)	 AG	460-657	GT	GGG
-recovered snap_scaffold_3492-snap.1-T1, internal, 81, 369
-recovered snap_scaffold_3492-snap.1-T1, internal, 460, 657
Valid prediction for GlimmerHMM_glimmerT_63375-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1010
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support