-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3487

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 55, 149
Couldn't classify 777, 806
Sorry, prediction GeneMark_model.111061_t fails validation.
(TCT)	 AG	55-149	GT	CCG
(GAA)	 AG	176-295	GT	GAG
(GGA)	 AG	317-328	GC	AGG
(GGA)	 AG	351-359	GT	GGG
(AGA)	 AG	389-403	GT	TTG
(AGG)	 AG	427-435	GT	GAG
(AGG)	 AG	461-511	GT	GGG
(GGA)	 AG	535-555	GT	TGG
(GGA)	 AG	583-657	GT	GGG
(TGG)	 AG	680-685	GT	GGG
(AGG)	 AG	714-746	GT	GGG
(GGA)	 AG	777-806	GT	GAG
-recovered GeneMark_model.111061_t, internal, 55, 149
-recovered GeneMark_model.111061_t, internal, 176, 295
-recovered GeneMark_model.111061_t, internal, 317, 328
-recovered GeneMark_model.111061_t, internal, 351, 359
-recovered GeneMark_model.111061_t, internal, 389, 403
-recovered GeneMark_model.111061_t, internal, 427, 435
-recovered GeneMark_model.111061_t, internal, 461, 511
-recovered GeneMark_model.111061_t, internal, 535, 555
-recovered GeneMark_model.111061_t, internal, 583, 657
-recovered GeneMark_model.111061_t, internal, 680, 685
-recovered GeneMark_model.111061_t, internal, 714, 746
-recovered GeneMark_model.111061_t, internal, 777, 806

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1010
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support