-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3484

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.111059_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 393, 484
Couldn't classify 858, 978
Sorry, prediction snap_scaffold_3484-snap.1-T1 fails validation.
(AAT)	 AG	393-484	GT	CAG
(GCC)	 AG	858-978	GT	AAG
-recovered snap_scaffold_3484-snap.1-T1, internal, 393, 484
-recovered snap_scaffold_3484-snap.1-T1, internal, 858, 978
Couldn't classify 393, 484
Couldn't classify 858, 1011
Sorry, prediction Augustus_model.g42360.t1 fails validation.
(AAT)	 AG	393-484	GT	CAG
(GCC)	 AG	858-1011		GG
-recovered Augustus_model.g42360.t1, internal, 393, 484
Couldn't classify 858, 1003
Sorry, prediction GeneMark_model.111058_t fails validation.
(ATG)	 CT	674-683	GT	CTG
(GCC)	 AG	858-1003	GC	TCG
-recovered GeneMark_model.111058_t, initial, 674, 683
-recovered GeneMark_model.111058_t, internal, 858, 1003

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1011
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support