-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3483

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 22, 74
Couldn't classify 887, 985
Sorry, prediction GeneMark_model.111057_t fails validation.
(GGG)	 AG	22-74	GT	GAG
(GGC)	 AG	652-690	GT	AGG
(AAG)	 AG	829-840	GT	AAG
(ACA)	 AG	887-985	GT	ACG
add_exon() Sorry, GeneMark_model.111057_t 652-690-terminal-1 is invalid.
-recovered GeneMark_model.111057_t, terminal, 652, 690
-recovered GeneMark_model.111057_t, internal, 22, 74
-recovered GeneMark_model.111057_t, internal, 652, 690
-recovered GeneMark_model.111057_t, internal, 829, 840
-recovered GeneMark_model.111057_t, internal, 887, 985

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1011
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support