-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3480

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 296, 480
Sorry, prediction Augustus_model.g42359.t1 fails validation.
(GTA)	 AG	296-480	GT	AGG
(CAG)	 AG	555-641	GT	GAG
-recovered Augustus_model.g42359.t1, terminal, 555, 641
-recovered Augustus_model.g42359.t1, internal, 296, 480
-recovered Augustus_model.g42359.t1, internal, 555, 641
Couldn't classify 296, 480
Sorry, prediction GeneMark_model.111056_t fails validation.
(GTA)	 AG	296-480	GT	AGG
-recovered GeneMark_model.111056_t, internal, 296, 480
Couldn't classify 296, 480
Sorry, prediction snap_scaffold_3480-snap.1-T1 fails validation.
(GTA)	 AG	296-480	GT	AGG
-recovered snap_scaffold_3480-snap.1-T1, internal, 296, 480

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1011
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support