-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_348

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7256, 7500
Sorry, prediction GlimmerHMM_glimmerT_61738-T1 fails validation.
(ATG)	 AC	4161-4209	GT	CGG
(GGG)	 AG	6708-6818	GT	CGG
(GCC)	 AG	7256-7500	GT	AGG
-recovered GlimmerHMM_glimmerT_61738-T1, initial, 4161, 4209
-recovered GlimmerHMM_glimmerT_61738-T1, internal, 6708, 6818
-recovered GlimmerHMM_glimmerT_61738-T1, internal, 7256, 7500
Couldn't classify 7256, 7500
Sorry, prediction snap_scaffold_348-snap.4-T1 fails validation.
(ATG)	 AC	4161-4217	GT	AGG
(AGA)	 AG	4371-4476	GT	ATG
(GGG)	 AG	6708-6818	GT	CGG
(GCC)	 AG	7256-7500	GT	AGG
-recovered snap_scaffold_348-snap.4-T1, initial, 4161, 4217
-recovered snap_scaffold_348-snap.4-T1, internal, 4371, 4476
-recovered snap_scaffold_348-snap.4-T1, internal, 6708, 6818
-recovered snap_scaffold_348-snap.4-T1, internal, 7256, 7500
Valid prediction for GeneMark_model.107379_t
Valid prediction for snap_scaffold_348-snap.2-T1
Valid prediction for GeneMark_model.107377_t
Valid prediction for Augustus_model.g41036.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6874, 7209
Sorry, prediction Augustus_model.g41035.t1 fails validation.
(ATG)	 CA	6406-6747	GT	AGG
(GTG)	 AG	6874-7209	GT	TGG
-recovered Augustus_model.g41035.t1, initial, 6406, 6747
-recovered Augustus_model.g41035.t1, internal, 6874, 7209
Valid prediction for GeneMark_model.107376_t
Couldn't classify 378, 487
Sorry, prediction snap_scaffold_348-snap.3-T1 fails validation.
(GAG)	 AG	378-487	GT	GGG
(ACG)	 AG	1060-1154	GT	ACG
(GCA)	 AG	2557-2674	GT	AGG
(AAT)	 AG	3984-4151	CC	GAC
-recovered snap_scaffold_348-snap.3-T1, terminal, 3984, 4151
-recovered snap_scaffold_348-snap.3-T1, internal, 378, 487
-recovered snap_scaffold_348-snap.3-T1, internal, 1060, 1154
-recovered snap_scaffold_348-snap.3-T1, internal, 2557, 2674
Valid prediction for GlimmerHMM_glimmerT_61737-T1
Valid prediction for GlimmerHMM_glimmerT_61736-T1
Valid prediction for GeneMark_model.107378_t
Couldn't classify 6874, 7227
Sorry, prediction snap_scaffold_348-snap.1-T1 fails validation.
(ATG)	 CT	4626-4647	GT	AAG
(GAA)	 AG	6368-6747	GT	AGG
(GTG)	 AG	6874-7227	GT	TGG
-recovered snap_scaffold_348-snap.1-T1, initial, 4626, 4647
-recovered snap_scaffold_348-snap.1-T1, internal, 6368, 6747
-recovered snap_scaffold_348-snap.1-T1, internal, 6874, 7227

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3247, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7495, rend_intergenic: 4161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7872
-exon list size: 46


building trellis

2.1    
4.2    
6.2    
8.3    
10.4    
12.5    
14.6    
16.7    
18.8    
20.8    
22.9    
25.0    
27.1    
29.2    
31.2    
33.3    
35.4    
37.5    
39.6    
41.7    
43.8    
45.8    
47.9    
50.0    
52.1    
54.2    
56.2    
58.3    
60.4    
62.5    
64.6    
66.7    
68.8    
70.8    
72.9    
75.0    
77.1    
79.2    
81.2    
83.3    
85.4    
87.5    
89.6    
91.7    
93.8    
95.8    
97.9    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 3247, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7495, rend_intergenic: 4161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support