-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3479

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 857, 934
Sorry, prediction GeneMark_model.111055_t fails validation.
(ATG)	 GC	344-492	GT	AGG
(AGA)	 AG	529-555	GT	AGG
(AGA)	 AG	595-600	GT	GGG
(AGG)	 AG	621-641	GT	GAG
(TGG)	 AG	857-934	GT	TGG
-recovered GeneMark_model.111055_t, initial, 344, 492
-recovered GeneMark_model.111055_t, internal, 529, 555
-recovered GeneMark_model.111055_t, internal, 595, 600
-recovered GeneMark_model.111055_t, internal, 621, 641
-recovered GeneMark_model.111055_t, internal, 857, 934

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 790, 998
Sorry, prediction snap_scaffold_3479-snap.1-T1 fails validation.
(AAC)	 AG	790-998	GT	AGG
-recovered snap_scaffold_3479-snap.1-T1, internal, 790, 998

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1012
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support