-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3477

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g42358.t1
add_exon() Sorry, Augustus_model.g42358.t1 454-742-terminal-1 is invalid.
Couldn't classify 350, 390
Couldn't classify 955, 1004
Sorry, prediction GeneMark_model.111054_t fails validation.
(GAG)	 AG	350-390	GT	CTG
(GCA)	 AG	454-553	GT	CAG
(TTG)	 AG	955-1004	GC	AAG
-recovered GeneMark_model.111054_t, internal, 350, 390
-recovered GeneMark_model.111054_t, internal, 454, 553
-recovered GeneMark_model.111054_t, internal, 955, 1004
Couldn't classify 454, 738
Sorry, prediction snap_scaffold_3477-snap.1-T1 fails validation.
(GCA)	 AG	454-738	GT	GGG
(TAC)	 AG	988-1003	AG	GAA
-recovered snap_scaffold_3477-snap.1-T1, terminal, 988, 1003
-recovered snap_scaffold_3477-snap.1-T1, internal, 454, 738

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1012
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support