-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3475

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 19, 509
Couldn't classify 895, 991
Sorry, prediction GeneMark_model.111052_t fails validation.
(GCA)	 AG	19-509	GT	CTG
(AGA)	 AG	835-861	GT	GAG
(GGA)	 AG	895-991	GT	GAG
-recovered GeneMark_model.111052_t, internal, 19, 509
-recovered GeneMark_model.111052_t, internal, 835, 861
-recovered GeneMark_model.111052_t, internal, 895, 991
Valid prediction for snap_scaffold_3475-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_63374-T1
Valid prediction for Augustus_model.g42357.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1012
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support