-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3469

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9, 74
Couldn't classify 948, 1004
Sorry, prediction GeneMark_model.111049_t fails validation.
(GCA)	 AG	9-74	GT	ATG
(CTT)	 AG	231-376	GT	AAG
(GAA)	 AG	605-695	GT	AGG
(GCT)	 AG	948-1004	GT	AGG
-recovered GeneMark_model.111049_t, internal, 9, 74
-recovered GeneMark_model.111049_t, internal, 231, 376
-recovered GeneMark_model.111049_t, internal, 605, 695
-recovered GeneMark_model.111049_t, internal, 948, 1004
Couldn't classify 1, 74
Couldn't classify 948, 1013
Sorry, prediction HiQ_model.g42354.t1 fails validation.
(ACC)	 AG	1-74	GT	ATG
(CTT)	 AG	231-376	GT	AAG
(GAA)	 AG	605-695	GT	AGG
(GCT)	 AG	948-1013		AG
-recovered HiQ_model.g42354.t1, internal, 231, 376
-recovered HiQ_model.g42354.t1, internal, 605, 695
Couldn't classify 231, 376
Couldn't classify 948, 1004
Sorry, prediction snap_scaffold_3469-snap.1-T1 fails validation.
(CTT)	 AG	231-376	GT	AAG
(GAA)	 AG	605-695	GT	AGG
(GCT)	 AG	948-1004	GT	AGG
-recovered snap_scaffold_3469-snap.1-T1, internal, 231, 376
-recovered snap_scaffold_3469-snap.1-T1, internal, 605, 695
-recovered snap_scaffold_3469-snap.1-T1, internal, 948, 1004
Couldn't classify 30, 74
Couldn't classify 948, 1010
Sorry, prediction pasa_asmbl_40977.p1 fails validation.
(ACT)	 AC	30-74	GT	ATG
(CTT)	 AG	231-376	GT	AAG
(GAA)	 AG	605-695	GT	AGG
(GCT)	 AG	948-1010	AA	AGA
-recovered pasa_asmbl_40977.p1, internal, 231, 376
-recovered pasa_asmbl_40977.p1, internal, 605, 695

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1013
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support