-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3465

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 36, 44
Sorry, prediction GeneMark_model.111047_t fails validation.
(AGA)	 AG	36-44	GT	GAG
(ACA)	 AG	68-82	GT	GCG
(AGA)	 AG	104-124	GT	GAG
(AGA)	 AG	146-178	GT	GAG
(AGA)	 AG	202-234	GT	GAG
(ACA)	 AG	260-304	GT	GAG
(AGA)	 AG	328-380	GT	GAG
(GGG)	 AG	398-410	GT	CAG
(AGA)	 AG	432-440	GT	CAG
(AGA)	 AG	462-482	GT	GAG
(ACC)	 AG	511-525	GT	GAG
(AGA)	 AG	563-586	GT	GAG
(ACA)	 AG	622-721	AA	AGA
-recovered GeneMark_model.111047_t, terminal, 622, 721
-recovered GeneMark_model.111047_t, internal, 36, 44
-recovered GeneMark_model.111047_t, internal, 68, 82
-recovered GeneMark_model.111047_t, internal, 104, 124
-recovered GeneMark_model.111047_t, internal, 146, 178
-recovered GeneMark_model.111047_t, internal, 202, 234
-recovered GeneMark_model.111047_t, internal, 260, 304
-recovered GeneMark_model.111047_t, internal, 328, 380
-recovered GeneMark_model.111047_t, internal, 398, 410
-recovered GeneMark_model.111047_t, internal, 432, 440
-recovered GeneMark_model.111047_t, internal, 462, 482
-recovered GeneMark_model.111047_t, internal, 511, 525
-recovered GeneMark_model.111047_t, internal, 563, 586

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1014
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support