-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_346

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_346-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_346-snap.3-T1
Valid prediction for Augustus_model.g41034.t1
Couldn't classify 557, 619
Couldn't classify 6414, 6423
Sorry, prediction GeneMark_model.107370_t fails validation.
(TAT)	 AG	557-619	GT	AGG
(TGC)	 AG	2957-3121	GT	GGG
(ATC)	 AG	5066-5170	GT	AGG
(GGG)	 AG	5371-5558	GT	GGG
(ATC)	 AG	5673-5781	GT	CGG
(GTG)	 AG	5877-5973	GT	GAG
(GAC)	 AG	6172-6304	GT	CTG
(CAA)	 AG	6333-6361	GT	CGG
(ATG)	 AG	6414-6423	GT	GGG
-recovered GeneMark_model.107370_t, initial, 6414, 6423
add_exon() Sorry, GeneMark_model.107370_t 5877-5973-terminal-3 is invalid.
-recovered GeneMark_model.107370_t, terminal, 5877, 5973
-recovered GeneMark_model.107370_t, internal, 557, 619
-recovered GeneMark_model.107370_t, internal, 2957, 3121
-recovered GeneMark_model.107370_t, internal, 5066, 5170
-recovered GeneMark_model.107370_t, internal, 5371, 5558
-recovered GeneMark_model.107370_t, internal, 5673, 5781
-recovered GeneMark_model.107370_t, internal, 5877, 5973
-recovered GeneMark_model.107370_t, internal, 6172, 6304
-recovered GeneMark_model.107370_t, internal, 6333, 6361
-recovered GeneMark_model.107370_t, internal, 6414, 6423
Valid prediction for snap_scaffold_346-snap.2-T1
Couldn't classify 2938, 3121
Sorry, prediction GlimmerHMM_glimmerT_61734-T1 fails validation.
(AAG)	 AG	2938-3121	GT	GGG
(ATC)	 AG	5066-5170	GT	AGG
(GGG)	 AG	5371-5558	GT	GGG
(ATC)	 AG	5673-5781	GT	CGG
(GTG)	 AG	5877-5973	GT	GAG
(GAC)	 AG	6172-6308	AG	AGA
add_exon() Sorry, GlimmerHMM_glimmerT_61734-T1 5877-5973-terminal-3 is invalid.
-recovered GlimmerHMM_glimmerT_61734-T1, terminal, 5877, 5973
-recovered GlimmerHMM_glimmerT_61734-T1, terminal, 6172, 6308
-recovered GlimmerHMM_glimmerT_61734-T1, internal, 2938, 3121
-recovered GlimmerHMM_glimmerT_61734-T1, internal, 5066, 5170
-recovered GlimmerHMM_glimmerT_61734-T1, internal, 5371, 5558
-recovered GlimmerHMM_glimmerT_61734-T1, internal, 5673, 5781
-recovered GlimmerHMM_glimmerT_61734-T1, internal, 5877, 5973

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4054, rend_intergenic: 1696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7902
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4054, rend_intergenic: 1696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support