-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3459

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 28, 108
Couldn't classify 794, 833
Sorry, prediction GeneMark_model.111042_t fails validation.
(GGG)	 AG	28-108	GT	AGG
(GAG)	 AG	291-375	GT	CAG
(ACA)	 AG	494-514	GT	GAG
(AGA)	 AG	664-669	GT	AAG
(GAA)	 AG	694-726	GT	GAG
(GAA)	 AG	750-767	GT	GTG
(ACG)	 AG	794-833	GT	AGG
-recovered GeneMark_model.111042_t, internal, 28, 108
-recovered GeneMark_model.111042_t, internal, 291, 375
-recovered GeneMark_model.111042_t, internal, 494, 514
-recovered GeneMark_model.111042_t, internal, 664, 669
-recovered GeneMark_model.111042_t, internal, 694, 726
-recovered GeneMark_model.111042_t, internal, 750, 767
-recovered GeneMark_model.111042_t, internal, 794, 833
Couldn't classify 48, 108
Couldn't classify 633, 833
Sorry, prediction snap_scaffold_3459-snap.1-T1 fails validation.
(AAT)	 AG	48-108	GT	AGG
(AGG)	 AG	633-833	GT	AGG
-recovered snap_scaffold_3459-snap.1-T1, internal, 48, 108
-recovered snap_scaffold_3459-snap.1-T1, internal, 633, 833

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1015
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support