-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3456

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 431, 598
Couldn't classify 785, 983
Sorry, prediction snap_scaffold_3456-snap.1-T1 fails validation.
(TGC)	 AG	431-598	GT	ATG
(GAA)	 AG	785-983	GT	AGG
-recovered snap_scaffold_3456-snap.1-T1, internal, 431, 598
-recovered snap_scaffold_3456-snap.1-T1, internal, 785, 983
Couldn't classify 43, 598
Couldn't classify 785, 1005
Sorry, prediction GeneMark_model.111041_t fails validation.
(ACA)	 AG	43-598	GT	ATG
(GAA)	 AG	785-1005	GT	AGG
-recovered GeneMark_model.111041_t, internal, 43, 598
-recovered GeneMark_model.111041_t, internal, 785, 1005

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1015
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support