-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3454

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 107, 313
Sorry, prediction Augustus_model.g42353.t1 fails validation.
(GTA)	 AG	107-313	GT	TGG
(GTA)	 AG	889-908	AT	AGA
-recovered Augustus_model.g42353.t1, terminal, 889, 908
-recovered Augustus_model.g42353.t1, internal, 107, 313
Couldn't classify 107, 313
Sorry, prediction snap_scaffold_3454-snap.1-T1 fails validation.
(GTA)	 AG	107-313	GT	TGG
-recovered snap_scaffold_3454-snap.1-T1, internal, 107, 313

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 14, 75
Couldn't classify 940, 1000
Sorry, prediction GeneMark_model.111040_t fails validation.
(GAA)	 AG	14-75	GT	AGG
(GGA)	 AG	754-798	GT	GCG
(TCC)	 AG	825-918	GT	AGG
(GGG)	 AG	940-1000	GT	AGG
-recovered GeneMark_model.111040_t, internal, 14, 75
-recovered GeneMark_model.111040_t, internal, 754, 798
-recovered GeneMark_model.111040_t, internal, 825, 918
-recovered GeneMark_model.111040_t, internal, 940, 1000

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1015
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support