-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3453

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 731, 819
Sorry, prediction GlimmerHMM_glimmerT_63370-T1 fails validation.
(ATG)	 AC	107-224	GT	TGG
(GAC)	 AG	731-819	GT	AAG
-recovered GlimmerHMM_glimmerT_63370-T1, initial, 107, 224
-recovered GlimmerHMM_glimmerT_63370-T1, internal, 731, 819

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 260, 370
Couldn't classify 852, 985
Sorry, prediction snap_scaffold_3453-snap.1-T1 fails validation.
(CGT)	 AG	260-370	GT	CAG
(GCA)	 AG	852-985	GT	TGG
-recovered snap_scaffold_3453-snap.1-T1, internal, 260, 370
-recovered snap_scaffold_3453-snap.1-T1, internal, 852, 985

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1015
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support