-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3452

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 245, 331
Couldn't classify 657, 803
Sorry, prediction GeneMark_model.111039_t fails validation.
(ACA)	 AG	245-331	GT	CAG
(TGT)	 AG	353-631	GT	GTG
(AAA)	 AG	657-803	GT	GAG
-recovered GeneMark_model.111039_t, internal, 245, 331
-recovered GeneMark_model.111039_t, internal, 353, 631
-recovered GeneMark_model.111039_t, internal, 657, 803
Couldn't classify 226, 629
Sorry, prediction snap_scaffold_3452-snap.1-T1 fails validation.
(GCT)	 AG	226-629	GT	ATG
-recovered snap_scaffold_3452-snap.1-T1, internal, 226, 629

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1015
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support