-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3451

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 121, 173
Couldn't classify 534, 635
Sorry, prediction GeneMark_model.111038_t fails validation.
(GGA)	 AG	121-173	GT	GGG
(CCA)	 AG	410-512	GT	AGG
(CAG)	 AG	534-635	GT	TTG
-recovered GeneMark_model.111038_t, internal, 121, 173
-recovered GeneMark_model.111038_t, internal, 410, 512
-recovered GeneMark_model.111038_t, internal, 534, 635
Couldn't classify 410, 621
Couldn't classify 749, 780
Sorry, prediction snap_scaffold_3451-snap.1-T1 fails validation.
(CCA)	 AG	410-621	GT	AGG
(TTC)	 AG	749-780	GT	AGG
-recovered snap_scaffold_3451-snap.1-T1, internal, 410, 621
-recovered snap_scaffold_3451-snap.1-T1, internal, 749, 780

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1016
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support