-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3440

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 155, 246
Sorry, prediction GeneMark_model.111033_t fails validation.
(ATT)	 AG	155-246	GT	GGG
(AAA)	 AG	318-323	GT	CGG
(AGA)	 AG	349-360	GT	AAG
(AGA)	 AG	435-447	GG	GAG
-recovered GeneMark_model.111033_t, terminal, 435, 447
-recovered GeneMark_model.111033_t, internal, 155, 246
-recovered GeneMark_model.111033_t, internal, 318, 323
-recovered GeneMark_model.111033_t, internal, 349, 360
Couldn't classify 155, 370
Couldn't classify 479, 564
Sorry, prediction snap_scaffold_3440-snap.1-T1 fails validation.
(ATT)	 AG	155-370	GT	AAG
(ACC)	 AG	479-564	GT	AGG
-recovered snap_scaffold_3440-snap.1-T1, internal, 155, 370
-recovered snap_scaffold_3440-snap.1-T1, internal, 479, 564

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1017
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support