-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_344

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 421, 432
Sorry, prediction GeneMark_model.107363_t fails validation.
(AGA)	 AG	421-432	GC	AGG
(AGG)	 AG	455-568	GC	AGG
(GGA)	 AG	1861-1896	GT	GAG
(GGA)	 AG	1923-1934	GT	GAG
(AAG)	 AG	1994-2116	GT	AAG
(ACA)	 AG	2147-2240	GT	AGG
-recovered GeneMark_model.107363_t, terminal, 2147, 2240
-recovered GeneMark_model.107363_t, internal, 421, 432
-recovered GeneMark_model.107363_t, internal, 455, 568
-recovered GeneMark_model.107363_t, internal, 1861, 1896
-recovered GeneMark_model.107363_t, internal, 1923, 1934
-recovered GeneMark_model.107363_t, internal, 1994, 2116
-recovered GeneMark_model.107363_t, internal, 2147, 2240
Valid prediction for GeneMark_model.107366_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107365_t
Valid prediction for GeneMark_model.107364_t
Couldn't classify 305, 385
Sorry, prediction GeneMark_model.107367_t fails validation.
(AGG)	 AG	305-385	GT	TGG
(GAG)	 AG	413-515	CA	GAC
-recovered GeneMark_model.107367_t, terminal, 413, 515
-recovered GeneMark_model.107367_t, internal, 305, 385
Couldn't classify 7791, 7927
Sorry, prediction Augustus_model.g41033.t1 fails validation.
(ATG)	 AC	6204-6315	GT	GGG
(CCC)	 AG	7791-7927		TT
-recovered Augustus_model.g41033.t1, initial, 6204, 6315
Couldn't classify 36, 82
Couldn't classify 7791, 7876
Sorry, prediction snap_scaffold_344-snap.1-T1 fails validation.
(TCC)	 AG	36-82	GT	AGG
(GGG)	 AG	289-385	GT	TGG
(GAT)	 AG	930-1057	GT	AGG
(AGG)	 AG	4894-5411	GT	GAG
(ATA)	 AG	6156-6315	GT	GGG
(CCC)	 AG	7791-7876	GT	CCG
-recovered snap_scaffold_344-snap.1-T1, internal, 36, 82
-recovered snap_scaffold_344-snap.1-T1, internal, 289, 385
-recovered snap_scaffold_344-snap.1-T1, internal, 930, 1057
-recovered snap_scaffold_344-snap.1-T1, internal, 4894, 5411
-recovered snap_scaffold_344-snap.1-T1, internal, 6156, 6315
-recovered snap_scaffold_344-snap.1-T1, internal, 7791, 7876
Couldn't classify 2297, 2364
Sorry, prediction GlimmerHMM_glimmerT_61733-T1 fails validation.
(AGG)	 AG	2297-2364	GT	ATG
(CAG)	 AG	6153-6419	TC	AAT
-recovered GlimmerHMM_glimmerT_61733-T1, terminal, 6153, 6419
-recovered GlimmerHMM_glimmerT_61733-T1, internal, 2297, 2364

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7927
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support