-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3439

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 785, 935
Sorry, prediction GlimmerHMM_glimmerT_63368-T1 fails validation.
(ATG)	 CA	440-660	GT	AGG
(GCT)	 AG	785-935	GT	AGG
-recovered GlimmerHMM_glimmerT_63368-T1, initial, 440, 660
-recovered GlimmerHMM_glimmerT_63368-T1, internal, 785, 935
Couldn't classify 14, 127
Couldn't classify 785, 998
Sorry, prediction GeneMark_model.111032_t fails validation.
(CTG)	 AG	14-127	GT	CTG
(GTG)	 AG	464-660	GT	AGG
(GCT)	 AG	785-998	GT	AGG
-recovered GeneMark_model.111032_t, internal, 14, 127
-recovered GeneMark_model.111032_t, internal, 464, 660
-recovered GeneMark_model.111032_t, internal, 785, 998
Couldn't classify 1, 67
Sorry, prediction Augustus_model.g42351.t1 fails validation.
(AGA)	 GA	1-67	GT	AGG
(GTG)	 AG	464-660	GT	AGG
(GCT)	 AG	785-1010	GA	GAG
-recovered Augustus_model.g42351.t1, terminal, 785, 1010
-recovered Augustus_model.g42351.t1, internal, 464, 660
Couldn't classify 785, 998
Sorry, prediction snap_scaffold_3439-snap.1-T1 fails validation.
(ATG)	 CA	440-660	GT	AGG
(GCT)	 AG	785-998	GT	AGG
-recovered snap_scaffold_3439-snap.1-T1, initial, 440, 660
-recovered snap_scaffold_3439-snap.1-T1, internal, 785, 998

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1018
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support