-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3438

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 136, 204
Couldn't classify 876, 899
Sorry, prediction GeneMark_model.111031_t fails validation.
(AGA)	 AG	136-204	GT	GGG
(GCT)	 AG	320-334	GT	AGG
(GAG)	 AG	392-421	GC	AGG
(GAG)	 AG	452-496	GC	AGG
(GAG)	 AG	552-596	GC	AGG
(GAG)	 AG	652-696	GC	AGG
(GCT)	 AG	760-774	GT	AGG
(GCT)	 AG	800-814	GT	AGG
(GCT)	 AG	840-854	GT	AGG
(GCT)	 AG	876-899	GT	GTG
-recovered GeneMark_model.111031_t, internal, 136, 204
-recovered GeneMark_model.111031_t, internal, 320, 334
-recovered GeneMark_model.111031_t, internal, 392, 421
-recovered GeneMark_model.111031_t, internal, 452, 496
-recovered GeneMark_model.111031_t, internal, 552, 596
-recovered GeneMark_model.111031_t, internal, 652, 696
-recovered GeneMark_model.111031_t, internal, 760, 774
-recovered GeneMark_model.111031_t, internal, 800, 814
-recovered GeneMark_model.111031_t, internal, 840, 854
-recovered GeneMark_model.111031_t, internal, 876, 899

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1018
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support