-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3432

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 937, 1019
Sorry, prediction Augustus_model.g42350.t1 fails validation.
(ATG)	 CG	110-498	GT	AGG
(GTC)	 AG	937-1019		CC
-recovered Augustus_model.g42350.t1, initial, 110, 498
Valid prediction for GlimmerHMM_glimmerT_63367-T1
Couldn't classify 158, 498
Sorry, prediction snap_scaffold_3432-snap.1-T1 fails validation.
(GTG)	 AG	158-498	GT	AGG
-recovered snap_scaffold_3432-snap.1-T1, internal, 158, 498
Couldn't classify 21, 32
Couldn't classify 937, 999
Sorry, prediction GeneMark_model.111029_t fails validation.
(GGG)	 AG	21-32	GT	GGG
(GGG)	 AG	55-66	GT	GGG
(CCT)	 AG	87-135	GT	AGG
(GTG)	 AG	158-498	GT	AGG
(GGG)	 AG	590-601	GT	AGG
(GTC)	 AG	937-999	GC	CAG
-recovered GeneMark_model.111029_t, internal, 21, 32
-recovered GeneMark_model.111029_t, internal, 55, 66
-recovered GeneMark_model.111029_t, internal, 87, 135
-recovered GeneMark_model.111029_t, internal, 158, 498
-recovered GeneMark_model.111029_t, internal, 590, 601
-recovered GeneMark_model.111029_t, internal, 937, 999

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1019
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support