-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_343

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107360_t
Valid prediction for GeneMark_model.107362_t
Couldn't classify 517, 634
Couldn't classify 5980, 6283
Sorry, prediction snap_scaffold_343-snap.1-T1 fails validation.
(GTA)	 AG	517-634	GT	AGG
(GAT)	 AG	4112-4188	GT	TGG
(GAG)	 AG	5980-6283	GT	AGG
-recovered snap_scaffold_343-snap.1-T1, internal, 517, 634
-recovered snap_scaffold_343-snap.1-T1, internal, 4112, 4188
-recovered snap_scaffold_343-snap.1-T1, internal, 5980, 6283

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107359_t
Couldn't classify 5138, 5452
Sorry, prediction snap_scaffold_343-snap.2-T1 fails validation.
(GGC)	 AG	5138-5452	GT	GGG
-recovered snap_scaffold_343-snap.2-T1, internal, 5138, 5452
Valid prediction for GeneMark_model.107361_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6283, rend_intergenic: 2512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7963
-exon list size: 44


building trellis

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30.4    
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34.8    
37.0    
39.1    
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43.5    
45.7    
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50.0    
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58.7    
60.9    
63.0    
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82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6283, rend_intergenic: 2512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support