-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3427

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 55, 105
Couldn't classify 913, 992
Sorry, prediction GeneMark_model.111026_t fails validation.
(AGA)	 AG	55-105	GT	GAG
(AGA)	 AG	139-147	GT	GAG
(TAT)	 AG	173-193	GT	ATG
(TAT)	 AG	221-241	GT	GAG
(TAT)	 AG	269-295	GT	ATG
(TAT)	 AG	319-345	GT	ATG
(AGA)	 AG	375-401	GT	GAG
(AGG)	 AG	423-431	GT	ATG
(AGA)	 AG	455-469	GT	ATG
(AGA)	 AG	495-527	GT	GAG
(AGA)	 AG	551-577	GT	GAG
(AGA)	 AG	609-641	GT	GAG
(GGA)	 AG	665-691	GT	ATG
(TAT)	 AG	715-747	GT	ATG
(TAT)	 AG	775-795	GT	GAG
(AGA)	 AG	826-834	GT	GAG
(GAG)	 AG	865-876	GT	CAG
(AGA)	 AG	913-992	GT	GAG
-recovered GeneMark_model.111026_t, internal, 55, 105
-recovered GeneMark_model.111026_t, internal, 139, 147
-recovered GeneMark_model.111026_t, internal, 173, 193
-recovered GeneMark_model.111026_t, internal, 221, 241
-recovered GeneMark_model.111026_t, internal, 269, 295
-recovered GeneMark_model.111026_t, internal, 319, 345
-recovered GeneMark_model.111026_t, internal, 375, 401
-recovered GeneMark_model.111026_t, internal, 423, 431
-recovered GeneMark_model.111026_t, internal, 455, 469
-recovered GeneMark_model.111026_t, internal, 495, 527
-recovered GeneMark_model.111026_t, internal, 551, 577
-recovered GeneMark_model.111026_t, internal, 609, 641
-recovered GeneMark_model.111026_t, internal, 665, 691
-recovered GeneMark_model.111026_t, internal, 715, 747
-recovered GeneMark_model.111026_t, internal, 775, 795
-recovered GeneMark_model.111026_t, internal, 826, 834
-recovered GeneMark_model.111026_t, internal, 865, 876
-recovered GeneMark_model.111026_t, internal, 913, 992

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1019
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support