-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3425

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 724, 796
Sorry, prediction GeneMark_model.111024_t fails validation.
(ATG)	 GG	354-391	GT	AAG
(GTT)	 AG	415-445	GT	AGG
(AGA)	 AG	688-701	GT	AGG
(AGA)	 AG	724-796	GT	AGG
-recovered GeneMark_model.111024_t, initial, 354, 391
-recovered GeneMark_model.111024_t, internal, 415, 445
-recovered GeneMark_model.111024_t, internal, 688, 701
-recovered GeneMark_model.111024_t, internal, 724, 796

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1019
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support