-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3423

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 13, 101
Couldn't classify 794, 857
Sorry, prediction GeneMark_model.111022_t fails validation.
(CCT)	 AG	13-101	GT	AGG
(ACC)	 AG	335-344	GT	GGG
(GGG)	 AG	462-470	GT	AGG
(AAG)	 AG	794-857	GT	GAG
-recovered GeneMark_model.111022_t, internal, 13, 101
-recovered GeneMark_model.111022_t, internal, 335, 344
-recovered GeneMark_model.111022_t, internal, 462, 470
-recovered GeneMark_model.111022_t, internal, 794, 857
Couldn't classify 31, 101
Couldn't classify 688, 857
Sorry, prediction snap_scaffold_3423-snap.1-T1 fails validation.
(CCT)	 AG	31-101	GT	AGG
(TCC)	 AG	688-857	GT	GAG
-recovered snap_scaffold_3423-snap.1-T1, internal, 31, 101
-recovered snap_scaffold_3423-snap.1-T1, internal, 688, 857

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1020
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support