-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3420

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63365-T1
Couldn't classify 355, 621
Couldn't classify 970, 987
Sorry, prediction GeneMark_model.111020_t fails validation.
(GGA)	 AG	355-621	GT	GAG
(TGA)	 AG	699-719	GT	AAG
(TGT)	 AG	751-765	GT	AAG
(TGT)	 AG	797-811	GT	AAG
(TGA)	 AG	837-857	GT	AAG
(TGT)	 AG	884-898	GT	AAG
(AGA)	 AG	920-946	GT	AAG
(TGA)	 AG	970-987	GT	AAG
-recovered GeneMark_model.111020_t, terminal, 355, 621
-recovered GeneMark_model.111020_t, internal, 355, 621
-recovered GeneMark_model.111020_t, internal, 699, 719
-recovered GeneMark_model.111020_t, internal, 751, 765
-recovered GeneMark_model.111020_t, internal, 797, 811
-recovered GeneMark_model.111020_t, internal, 837, 857
-recovered GeneMark_model.111020_t, internal, 884, 898
-recovered GeneMark_model.111020_t, internal, 920, 946
-recovered GeneMark_model.111020_t, internal, 970, 987
Couldn't classify 249, 613
Sorry, prediction snap_scaffold_3420-snap.1-T1 fails validation.
(GCA)	 AG	249-613	GT	GGG
-recovered snap_scaffold_3420-snap.1-T1, internal, 249, 613

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1020
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support