-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_342

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_342-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1389, 1446
Sorry, prediction GeneMark_model.107358_t fails validation.
(AGA)	 AG	1389-1446	GT	CTG
(GCT)	 AG	1493-1560	GT	GGG
(GGG)	 AG	1588-1599	GT	CGG
(GGA)	 AG	1801-1923	GT	CGG
(AGA)	 AG	4566-4850	GT	GAG
(AGA)	 AG	4980-4992	GA	AGG
-recovered GeneMark_model.107358_t, terminal, 4980, 4992
-recovered GeneMark_model.107358_t, internal, 1389, 1446
-recovered GeneMark_model.107358_t, internal, 1493, 1560
-recovered GeneMark_model.107358_t, internal, 1588, 1599
-recovered GeneMark_model.107358_t, internal, 1801, 1923
-recovered GeneMark_model.107358_t, internal, 4566, 4850
Valid prediction for GlimmerHMM_glimmerT_61732-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61732-T1 4517-4914-terminal-1 is invalid.
Couldn't classify 4524, 4908
Sorry, prediction snap_scaffold_342-snap.1-T1 fails validation.
(ATG)	 GC	2687-2705	GT	AAG
(CTT)	 AG	2848-2961	GT	GGG
(GAT)	 AG	3719-3815	GT	GGG
(ACC)	 AG	4524-4908	GT	TTG
-recovered snap_scaffold_342-snap.1-T1, initial, 2687, 2705
-recovered snap_scaffold_342-snap.1-T1, internal, 2848, 2961
-recovered snap_scaffold_342-snap.1-T1, internal, 3719, 3815
-recovered snap_scaffold_342-snap.1-T1, internal, 4524, 4908

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5284, rend_intergenic: 4288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7970
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5284, rend_intergenic: 4288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support