-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3415

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 46
Couldn't classify 770, 882
Sorry, prediction GeneMark_model.111018_t fails validation.
(AAG)	 AG	41-46	GT	GGG
(GGC)	 AG	74-81	GT	TGG
(ACA)	 AG	770-882	GT	ATG
-recovered GeneMark_model.111018_t, internal, 41, 46
-recovered GeneMark_model.111018_t, internal, 74, 81
-recovered GeneMark_model.111018_t, internal, 770, 882
Couldn't classify 707, 828
Sorry, prediction Augustus_model.g42348.t1 fails validation.
(GAG)	 AG	707-828	GT	AGG
-recovered Augustus_model.g42348.t1, internal, 707, 828

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1020
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support