-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_341

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 125, 253
Sorry, prediction GeneMark_model.107355_t fails validation.
(AGA)	 AG	125-253	GC	GAG
(AGG)	 AG	279-350	GT	AAG
(GGT)	 AG	407-445	GT	AGG
(AGG)	 AG	1087-1204	GT	GGG
(CAC)	 AG	1778-1930	GA	AAG
-recovered GeneMark_model.107355_t, terminal, 1778, 1930
-recovered GeneMark_model.107355_t, internal, 125, 253
-recovered GeneMark_model.107355_t, internal, 279, 350
-recovered GeneMark_model.107355_t, internal, 407, 445
-recovered GeneMark_model.107355_t, internal, 1087, 1204
Valid prediction for GlimmerHMM_glimmerT_61730-T1
Valid prediction for GeneMark_model.107357_t
Valid prediction for GlimmerHMM_glimmerT_61729-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61729-T1 1733-1920-terminal-1 is invalid.
Couldn't classify 1778, 1926
Sorry, prediction Augustus_model.g41032.t1 fails validation.
(CAC)	 AG	1778-1926	GT	CTG
(GAG)	 AG	4841-5120	CC	GAC
-recovered Augustus_model.g41032.t1, terminal, 4841, 5120
-recovered Augustus_model.g41032.t1, internal, 1778, 1926
Couldn't classify 1778, 1926
Sorry, prediction snap_scaffold_341-snap.2-T1 fails validation.
(CAC)	 AG	1778-1926	GT	CTG
(GAG)	 AG	4841-5086	GT	AGG
(AGG)	 AG	6432-6738	GG	AAG
-recovered snap_scaffold_341-snap.2-T1, terminal, 6432, 6738
-recovered snap_scaffold_341-snap.2-T1, internal, 1778, 1926
-recovered snap_scaffold_341-snap.2-T1, internal, 4841, 5086

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1533, 1617
Couldn't classify 6073, 6258
Sorry, prediction snap_scaffold_341-snap.1-T1 fails validation.
(GAG)	 AG	1533-1617	GT	GTG
(CAT)	 AG	2945-3046	GT	TGG
(AGA)	 AG	3150-3500	GT	TGG
(CCA)	 AG	6073-6258	GT	TAG
-recovered snap_scaffold_341-snap.1-T1, internal, 1533, 1617
-recovered snap_scaffold_341-snap.1-T1, internal, 2945, 3046
-recovered snap_scaffold_341-snap.1-T1, internal, 3150, 3500
-recovered snap_scaffold_341-snap.1-T1, internal, 6073, 6258
Valid prediction for GlimmerHMM_glimmerT_61731-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61731-T1 529-685-terminal-1 is invalid.
Valid prediction for GeneMark_model.107356_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6448, rend_intergenic: 1778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7980
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6448, rend_intergenic: 1778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support