-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3407

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 225, 260
Sorry, prediction GeneMark_model.111012_t fails validation.
(GGG)	 AG	225-260	GT	AGG
(AGG)	 AG	281-313	GT	GAG
(GGA)	 AG	389-412	GT	ACG
(AGC)	 AG	564-656	GT	GAG
(AGA)	 AG	678-698	GT	GAG
(CGA)	 AG	720-746	GC	GAG
(AGA)	 AG	772-816	GC	GAG
(AGA)	 AG	842-850	GC	GAG
(AGA)	 AG	876-914	GC	GAG
(AGA)	 AG	940-979	AG	AGA
-recovered GeneMark_model.111012_t, terminal, 940, 979
-recovered GeneMark_model.111012_t, internal, 225, 260
-recovered GeneMark_model.111012_t, internal, 281, 313
-recovered GeneMark_model.111012_t, internal, 389, 412
-recovered GeneMark_model.111012_t, internal, 564, 656
-recovered GeneMark_model.111012_t, internal, 678, 698
-recovered GeneMark_model.111012_t, internal, 720, 746
-recovered GeneMark_model.111012_t, internal, 772, 816
-recovered GeneMark_model.111012_t, internal, 842, 850
-recovered GeneMark_model.111012_t, internal, 876, 914

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1022
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support