-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3404

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 174, 374
Sorry, prediction Augustus_model.g42344.t1 fails validation.
(AGA)	 AG	174-374	GT	GGG
(ACC)	 AG	478-497	AC	AGA
-recovered Augustus_model.g42344.t1, terminal, 478, 497
-recovered Augustus_model.g42344.t1, internal, 174, 374
Couldn't classify 174, 374
Sorry, prediction GeneMark_model.111011_t fails validation.
(AGA)	 AG	174-374	GT	GGG
-recovered GeneMark_model.111011_t, internal, 174, 374
Valid prediction for GlimmerHMM_glimmerT_63361-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63361-T1 174-412-terminal-1 is invalid.
Valid prediction for snap_scaffold_3404-snap.1-T1
add_exon() Sorry, snap_scaffold_3404-snap.1-T1 174-412-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1022
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support