-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3402

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 176, 211
Couldn't classify 759, 797
Sorry, prediction GeneMark_model.111008_t fails validation.
(AGG)	 AG	176-211	GT	AGG
(GGG)	 AG	244-261	GT	AGG
(AGA)	 AG	307-324	GT	AGG
(GAG)	 AG	354-359	GT	AGG
(AGA)	 AG	384-404	GT	AGG
(AGA)	 AG	427-436	GT	AGG
(GGG)	 AG	559-581	GT	AGG
(GAG)	 AG	602-622	GT	CGG
(CAA)	 AG	759-797	GT	AGG
-recovered GeneMark_model.111008_t, internal, 176, 211
-recovered GeneMark_model.111008_t, internal, 244, 261
-recovered GeneMark_model.111008_t, internal, 307, 324
-recovered GeneMark_model.111008_t, internal, 354, 359
-recovered GeneMark_model.111008_t, internal, 384, 404
-recovered GeneMark_model.111008_t, internal, 427, 436
-recovered GeneMark_model.111008_t, internal, 559, 581
-recovered GeneMark_model.111008_t, internal, 602, 622
-recovered GeneMark_model.111008_t, internal, 759, 797

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1023
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support