-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3397

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 44, 97
Couldn't classify 494, 505
Sorry, prediction GeneMark_model.111003_t fails validation.
(CGT)	 AG	44-97	GT	CGG
(ACG)	 AG	137-276	GT	AGG
(GAG)	 AG	387-395	GT	GGG
(GAG)	 AG	418-423	GT	GGG
(GAG)	 AG	447-467	GT	GAG
(GAG)	 AG	494-505	GT	GGG
-recovered GeneMark_model.111003_t, internal, 44, 97
-recovered GeneMark_model.111003_t, internal, 137, 276
-recovered GeneMark_model.111003_t, internal, 387, 395
-recovered GeneMark_model.111003_t, internal, 418, 423
-recovered GeneMark_model.111003_t, internal, 447, 467
-recovered GeneMark_model.111003_t, internal, 494, 505

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 794, 985
Sorry, prediction snap_scaffold_3397-snap.1-T1 fails validation.
(CGG)	 AG	794-985	GT	AGG
-recovered snap_scaffold_3397-snap.1-T1, internal, 794, 985
Couldn't classify 794, 985
Sorry, prediction Augustus_model.g42341.t1 fails validation.
(ATG)	 AA	417-474	GT	AAG
(CGG)	 AG	794-985	GT	AGG
-recovered Augustus_model.g42341.t1, initial, 417, 474
-recovered Augustus_model.g42341.t1, internal, 794, 985

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1023
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support