-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3394

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 448, 636
Couldn't classify 815, 960
Sorry, prediction Augustus_model.g42338.t1 fails validation.
(TTC)	 AG	448-636	GT	AGG
(AAA)	 AG	815-960	GT	GGG
-recovered Augustus_model.g42338.t1, internal, 448, 636
-recovered Augustus_model.g42338.t1, internal, 815, 960
Couldn't classify 448, 636
Sorry, prediction GlimmerHMM_glimmerT_63360-T1 fails validation.
(TTC)	 AG	448-636	GT	AGG
(AAA)	 AG	815-964	GG	GAG
-recovered GlimmerHMM_glimmerT_63360-T1, terminal, 815, 964
-recovered GlimmerHMM_glimmerT_63360-T1, internal, 448, 636
Couldn't classify 448, 636
Couldn't classify 986, 1011
Sorry, prediction GeneMark_model.110999_t fails validation.
(TTC)	 AG	448-636	GT	AGG
(AAA)	 AG	815-960	GT	GGG
(GCC)	 AG	986-1011	GC	GGG
-recovered GeneMark_model.110999_t, internal, 448, 636
-recovered GeneMark_model.110999_t, internal, 815, 960
-recovered GeneMark_model.110999_t, internal, 986, 1011
Couldn't classify 448, 636
Couldn't classify 815, 960
Sorry, prediction snap_scaffold_3394-snap.1-T1 fails validation.
(TTC)	 AG	448-636	GT	AGG
(AAA)	 AG	815-960	GT	GGG
-recovered snap_scaffold_3394-snap.1-T1, internal, 448, 636
-recovered snap_scaffold_3394-snap.1-T1, internal, 815, 960
Couldn't classify 445, 636
Couldn't classify 815, 958
Sorry, prediction pasa_asmbl_40952.p1 fails validation.
(CAG)	 CC	445-636	GT	AGG
(AAA)	 AG	815-958	GG	TGG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1023
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support