-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3392

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 119, 223
Sorry, prediction GlimmerHMM_glimmerT_63359-T1 fails validation.
(GAG)	 AG	119-223	GT	GGG
(GAG)	 AG	541-681	GA	GAG
-recovered GlimmerHMM_glimmerT_63359-T1, terminal, 541, 681
-recovered GlimmerHMM_glimmerT_63359-T1, internal, 119, 223
Couldn't classify 119, 223
Couldn't classify 541, 677
Sorry, prediction GeneMark_model.110997_t fails validation.
(GAG)	 AG	119-223	GT	GGG
(GAG)	 AG	541-677	GT	TGG
-recovered GeneMark_model.110997_t, internal, 119, 223
-recovered GeneMark_model.110997_t, internal, 541, 677
Couldn't classify 119, 223
Couldn't classify 541, 677
Sorry, prediction snap_scaffold_3392-snap.1-T1 fails validation.
(GAG)	 AG	119-223	GT	GGG
(GAG)	 AG	541-677	GT	TGG
-recovered snap_scaffold_3392-snap.1-T1, internal, 119, 223
-recovered snap_scaffold_3392-snap.1-T1, internal, 541, 677
Couldn't classify 119, 223
Couldn't classify 541, 677
Sorry, prediction Augustus_model.g42337.t1 fails validation.
(GAG)	 AG	119-223	GT	GGG
(GAG)	 AG	541-677	GT	TGG
-recovered Augustus_model.g42337.t1, internal, 119, 223
-recovered Augustus_model.g42337.t1, internal, 541, 677

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1024
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support