-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3391

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 665, 685
Couldn't classify 966, 1016
Sorry, prediction GeneMark_model.110996_t fails validation.
(AGG)	 AG	665-685	GT	GGG
(GAA)	 AG	789-800	GT	GGG
(GGG)	 AG	840-884	GT	GGG
(AAG)	 AG	914-943	GT	GGG
(GGA)	 AG	966-1016	GT	GGG
-recovered GeneMark_model.110996_t, internal, 665, 685
-recovered GeneMark_model.110996_t, internal, 789, 800
-recovered GeneMark_model.110996_t, internal, 840, 884
-recovered GeneMark_model.110996_t, internal, 914, 943
-recovered GeneMark_model.110996_t, internal, 966, 1016
Couldn't classify 739, 1016
Sorry, prediction snap_scaffold_3391-snap.1-T1 fails validation.
(ATG)	 AG	484-490	GT	TGG
(GGA)	 AG	739-1016	GT	GGG
-recovered snap_scaffold_3391-snap.1-T1, initial, 484, 490
-recovered snap_scaffold_3391-snap.1-T1, internal, 484, 490
-recovered snap_scaffold_3391-snap.1-T1, internal, 739, 1016

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1024
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support