-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3390

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 539, 995
Sorry, prediction GeneMark_model.110995_t fails validation.
(ATG)	 GG	264-463	GT	AAG
(ACA)	 AG	489-497	GT	GAG
(TGA)	 AG	539-995	GC	ACG
-recovered GeneMark_model.110995_t, initial, 264, 463
-recovered GeneMark_model.110995_t, terminal, 489, 497
-recovered GeneMark_model.110995_t, internal, 489, 497
-recovered GeneMark_model.110995_t, internal, 539, 995

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110994_t
Couldn't classify 372, 494
Couldn't classify 766, 966
Sorry, prediction Augustus_model.g42336.t1 fails validation.
(AGT)	 AG	372-494	GT	GGG
(CTG)	 AG	766-966	GT	AGG
-recovered Augustus_model.g42336.t1, internal, 372, 494
-recovered Augustus_model.g42336.t1, internal, 766, 966
Couldn't classify 372, 494
Couldn't classify 766, 966
Sorry, prediction snap_scaffold_3390-snap.1-T1 fails validation.
(AGT)	 AG	372-494	GT	GGG
(CTG)	 AG	766-966	GT	AGG
-recovered snap_scaffold_3390-snap.1-T1, internal, 372, 494
-recovered snap_scaffold_3390-snap.1-T1, internal, 766, 966

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1024
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support