-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3388

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 139, 178
Couldn't classify 974, 979
Sorry, prediction GeneMark_model.110993_t fails validation.
(CTG)	 AG	139-178	GT	GAG
(GCT)	 AG	236-280	GT	GTG
(AGG)	 AG	302-367	GT	GTG
(GGT)	 AG	469-474	GT	GAG
(GGT)	 AG	499-528	GT	GGG
(AGA)	 AG	548-562	GT	ATG
(GGA)	 AG	587-622	GT	GAG
(CCT)	 AG	645-662	GT	GGG
(TGA)	 AG	714-722	GT	GGG
(GGT)	 AG	752-757	GT	GAG
(GGT)	 AG	782-829	GT	ATG
(GGT)	 AG	854-874	GT	ATG
(GGT)	 AG	929-949	GT	ATG
(GGT)	 AG	974-979	GT	GAG
-recovered GeneMark_model.110993_t, internal, 139, 178
-recovered GeneMark_model.110993_t, internal, 236, 280
-recovered GeneMark_model.110993_t, internal, 302, 367
-recovered GeneMark_model.110993_t, internal, 469, 474
-recovered GeneMark_model.110993_t, internal, 499, 528
-recovered GeneMark_model.110993_t, internal, 548, 562
-recovered GeneMark_model.110993_t, internal, 587, 622
-recovered GeneMark_model.110993_t, internal, 645, 662
-recovered GeneMark_model.110993_t, internal, 714, 722
-recovered GeneMark_model.110993_t, internal, 752, 757
-recovered GeneMark_model.110993_t, internal, 782, 829
-recovered GeneMark_model.110993_t, internal, 854, 874
-recovered GeneMark_model.110993_t, internal, 929, 949
-recovered GeneMark_model.110993_t, internal, 974, 979

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1024
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support