-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3387

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 78
Sorry, prediction GeneMark_model.110992_t fails validation.
(GGA)	 AG	37-78	GT	CAG
(GGT)	 AG	155-197	GT	AGG
(GCC)	 AG	308-358	GT	AGG
(GCA)	 AG	385-395	GT	GAG
(AGA)	 AG	516-603	AT	AGA
-recovered GeneMark_model.110992_t, terminal, 516, 603
-recovered GeneMark_model.110992_t, internal, 37, 78
-recovered GeneMark_model.110992_t, internal, 155, 197
-recovered GeneMark_model.110992_t, internal, 308, 358
-recovered GeneMark_model.110992_t, internal, 385, 395

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1024
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support