-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3386

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 46, 69
Sorry, prediction GeneMark_model.110990_t fails validation.
(AAC)	 AG	46-69	GT	GAG
(GCA)	 AG	116-190	GT	GAG
(GGA)	 AG	213-236	GC	AGG
(GCA)	 AG	261-407	GT	GGG
(ACA)	 AG	445-478	AA	GAA
-recovered GeneMark_model.110990_t, terminal, 445, 478
-recovered GeneMark_model.110990_t, internal, 46, 69
-recovered GeneMark_model.110990_t, internal, 116, 190
-recovered GeneMark_model.110990_t, internal, 213, 236
-recovered GeneMark_model.110990_t, internal, 261, 407
Valid prediction for Augustus_model.g42335.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 88, 391
Sorry, prediction snap_scaffold_3386-snap.1-T1 fails validation.
(GGG)	 AG	88-391	GT	ACG
(TAA)	 AG	848-965	TT	AAT
-recovered snap_scaffold_3386-snap.1-T1, terminal, 848, 965
-recovered snap_scaffold_3386-snap.1-T1, internal, 88, 391
Valid prediction for GeneMark_model.110991_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1024
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support