-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3384

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 218, 318
Couldn't classify 615, 635
Sorry, prediction GeneMark_model.110989_t fails validation.
(AAT)	 AG	218-318	GT	GGG
(AGA)	 AG	341-379	GT	GAG
(AAG)	 AG	405-422	GT	GGG
(AGA)	 AG	453-497	GT	TGG
(GGG)	 AG	525-542	GT	GGG
(AGA)	 AG	573-590	GT	GGG
(ATA)	 AG	615-635	GT	CAG
-recovered GeneMark_model.110989_t, internal, 218, 318
-recovered GeneMark_model.110989_t, internal, 341, 379
-recovered GeneMark_model.110989_t, internal, 405, 422
-recovered GeneMark_model.110989_t, internal, 453, 497
-recovered GeneMark_model.110989_t, internal, 525, 542
-recovered GeneMark_model.110989_t, internal, 573, 590
-recovered GeneMark_model.110989_t, internal, 615, 635

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 742, 850
Sorry, prediction Augustus_model.g42334.t1 fails validation.
(ACC)	 AG	742-850	GT	TGG
-recovered Augustus_model.g42334.t1, internal, 742, 850
Valid prediction for GlimmerHMM_glimmerT_63358-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63358-T1 742-955-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1025
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support