-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3381

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 37, 108
Couldn't classify 971, 991
Sorry, prediction GeneMark_model.110987_t fails validation.
(GGG)	 AG	37-108	GT	AGG
(GAC)	 AG	404-523	GT	TTG
(AGA)	 AG	663-671	GT	GTG
(AGA)	 AG	695-709	GT	GAG
(AGA)	 AG	737-745	GT	GAG
(AGA)	 AG	771-803	GT	GAG
(AGA)	 AG	829-849	GT	GAG
(ATG)	 AG	881-901	GT	GAG
(AGA)	 AG	927-947	GT	GAG
(AGA)	 AG	971-991	GT	AAG
-recovered GeneMark_model.110987_t, initial, 881, 901
-recovered GeneMark_model.110987_t, internal, 37, 108
-recovered GeneMark_model.110987_t, internal, 404, 523
-recovered GeneMark_model.110987_t, internal, 663, 671
-recovered GeneMark_model.110987_t, internal, 695, 709
-recovered GeneMark_model.110987_t, internal, 737, 745
-recovered GeneMark_model.110987_t, internal, 771, 803
-recovered GeneMark_model.110987_t, internal, 829, 849
-recovered GeneMark_model.110987_t, internal, 881, 901
-recovered GeneMark_model.110987_t, internal, 927, 947
-recovered GeneMark_model.110987_t, internal, 971, 991
Valid prediction for GlimmerHMM_glimmerT_63357-T1
Couldn't classify 325, 516
Sorry, prediction snap_scaffold_3381-snap.1-T1 fails validation.
(AAC)	 AG	325-516	GT	CCG
-recovered snap_scaffold_3381-snap.1-T1, internal, 325, 516

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1025
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support