-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_338

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4701, 5188
Couldn't classify 6901, 6975
Sorry, prediction snap_scaffold_338-snap.1-T1 fails validation.
(GTC)	 AG	4701-5188	GT	GAG
(GGT)	 AG	5369-5454	GT	CAG
(AGC)	 AG	6901-6975	GT	GGG
-recovered snap_scaffold_338-snap.1-T1, internal, 4701, 5188
-recovered snap_scaffold_338-snap.1-T1, internal, 5369, 5454
-recovered snap_scaffold_338-snap.1-T1, internal, 6901, 6975
Valid prediction for GlimmerHMM_glimmerT_61726-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61726-T1 4701-5245-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_61727-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2165, 2266
Sorry, prediction GeneMark_model.107349_t fails validation.
(AGA)	 AG	2165-2266	GT	AGG
(TGA)	 AG	2944-2971	CT	GAC
-recovered GeneMark_model.107349_t, terminal, 2944, 2971
-recovered GeneMark_model.107349_t, internal, 2165, 2266
Couldn't classify 7896, 7986
Sorry, prediction GeneMark_model.107348_t fails validation.
(ATG)	 GG	6804-6808	GT	GGG
(GAA)	 AG	7248-7274	GT	GGG
(AGG)	 AG	7301-7345	GT	GGG
(GGG)	 AG	7388-7405	GT	TGG
(GGG)	 AG	7448-7519	GT	GAG
(GGA)	 AG	7605-7700	GT	GGG
(GGG)	 AG	7727-7750	GT	GAG
(GGG)	 AG	7772-7795	GT	GAG
(AGT)	 AG	7817-7831	GT	GAG
(GGT)	 AG	7855-7872	GT	GGG
(TGG)	 AG	7896-7986	GC	TGG
-recovered GeneMark_model.107348_t, initial, 6804, 6808
-recovered GeneMark_model.107348_t, internal, 7248, 7274
-recovered GeneMark_model.107348_t, internal, 7301, 7345
-recovered GeneMark_model.107348_t, internal, 7388, 7405
-recovered GeneMark_model.107348_t, internal, 7448, 7519
-recovered GeneMark_model.107348_t, internal, 7605, 7700
-recovered GeneMark_model.107348_t, internal, 7727, 7750
-recovered GeneMark_model.107348_t, internal, 7772, 7795
-recovered GeneMark_model.107348_t, internal, 7817, 7831
-recovered GeneMark_model.107348_t, internal, 7855, 7872
-recovered GeneMark_model.107348_t, internal, 7896, 7986

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8000
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support