-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3375

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 443, 556
Sorry, prediction GeneMark_model.110983_t fails validation.
(GGG)	 AG	443-556	GT	GGG
(AGA)	 AG	588-597	GT	GGG
(ATC)	 AG	765-780	GT	CAG
(CAG)	 AG	828-900	GT	AGG
add_exon() Sorry, GeneMark_model.110983_t 828-900-terminal-3 is invalid.
-recovered GeneMark_model.110983_t, terminal, 828, 900
-recovered GeneMark_model.110983_t, internal, 443, 556
-recovered GeneMark_model.110983_t, internal, 588, 597
-recovered GeneMark_model.110983_t, internal, 765, 780
-recovered GeneMark_model.110983_t, internal, 828, 900

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1026
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support