-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3374

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 17, 164
Couldn't classify 874, 987
Sorry, prediction GeneMark_model.110982_t fails validation.
(CCA)	 AG	17-164	GT	GGG
(AAA)	 AG	188-338	GT	AGG
(GTC)	 AG	729-758	GT	TGG
(GGG)	 AG	824-843	GT	CTG
(AAA)	 AG	874-987	GT	AGG
-recovered GeneMark_model.110982_t, internal, 17, 164
-recovered GeneMark_model.110982_t, internal, 188, 338
-recovered GeneMark_model.110982_t, internal, 729, 758
-recovered GeneMark_model.110982_t, internal, 824, 843
-recovered GeneMark_model.110982_t, internal, 874, 987

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 186, 271
Couldn't classify 665, 728
Sorry, prediction Augustus_model.g42331.t1 fails validation.
(GCA)	 AG	186-271	GT	AGG
(AAA)	 AG	665-728	GT	AGG
-recovered Augustus_model.g42331.t1, internal, 186, 271
-recovered Augustus_model.g42331.t1, internal, 665, 728

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1026
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support