-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3367

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63354-T1
Couldn't classify 954, 990
Sorry, prediction GeneMark_model.110979_t fails validation.
(ATG)	 GA	584-639	GT	TGG
(GAC)	 AG	712-798	GT	GAG
(AGA)	 AG	826-876	GT	GAG
(AGA)	 AG	918-926	GT	GAG
(GAA)	 AG	954-990	GT	GAG
-recovered GeneMark_model.110979_t, initial, 584, 639
-recovered GeneMark_model.110979_t, internal, 712, 798
-recovered GeneMark_model.110979_t, internal, 826, 876
-recovered GeneMark_model.110979_t, internal, 918, 926
-recovered GeneMark_model.110979_t, internal, 954, 990

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 933, 995
Sorry, prediction GeneMark_model.110978_t fails validation.
(ATG)	 AA	576-601	GT	GAG
(ATT)	 AG	757-768	GT	ATG
(AGA)	 AG	797-808	GT	AGG
(CGA)	 AG	831-848	GT	AGG
(AGA)	 AG	871-906	GT	AGG
(ATG)	 AG	933-995	GT	AGG
-recovered GeneMark_model.110978_t, initial, 576, 601
add_exon() Sorry, GeneMark_model.110978_t 933-995-initial-1 is invalid.
-recovered GeneMark_model.110978_t, initial, 933, 995
-recovered GeneMark_model.110978_t, internal, 757, 768
-recovered GeneMark_model.110978_t, internal, 797, 808
-recovered GeneMark_model.110978_t, internal, 831, 848
-recovered GeneMark_model.110978_t, internal, 871, 906
-recovered GeneMark_model.110978_t, internal, 933, 995

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1027
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support