-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3362

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 27, 221
Sorry, prediction snap_scaffold_3362-snap.1-T1 fails validation.
(AGG)	 AG	27-221	GT	AGG
(GTT)	 AG	455-663	GT	CGG
(AGA)	 AG	795-971	GG	AAG
-recovered snap_scaffold_3362-snap.1-T1, terminal, 795, 971
-recovered snap_scaffold_3362-snap.1-T1, internal, 27, 221
-recovered snap_scaffold_3362-snap.1-T1, internal, 455, 663
Valid prediction for Augustus_model.g42328.t1
Valid prediction for GlimmerHMM_glimmerT_63352-T1
Couldn't classify 27, 221
Couldn't classify 928, 1012
Sorry, prediction GeneMark_model.110977_t fails validation.
(AGG)	 AG	27-221	GT	AGG
(TTG)	 AG	501-568	GT	AGG
(CCC)	 AG	633-685	GT	TCG
(GGG)	 AG	737-775	GT	CCG
(AAG)	 AG	869-908	GT	AGG
(GGC)	 AG	928-1012	GT	CAG
-recovered GeneMark_model.110977_t, internal, 27, 221
-recovered GeneMark_model.110977_t, internal, 501, 568
-recovered GeneMark_model.110977_t, internal, 633, 685
-recovered GeneMark_model.110977_t, internal, 737, 775
-recovered GeneMark_model.110977_t, internal, 869, 908
-recovered GeneMark_model.110977_t, internal, 928, 1012

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1028
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support