-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3361

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 573, 574
Couldn't classify 680, 776
Sorry, prediction CodingQuarry_transcript_46422-T1 fails validation.
(ATG)	 GG	573-574	GA	ATG
(GAA)	 AT	680-776	TA	GAT
Couldn't classify 101, 248
Couldn't classify 789, 1008
Sorry, prediction snap_scaffold_3361-snap.1-T1 fails validation.
(ATT)	 AG	101-248	GT	ATG
(TCG)	 AG	789-1008	GT	GGG
-recovered snap_scaffold_3361-snap.1-T1, internal, 101, 248
-recovered snap_scaffold_3361-snap.1-T1, internal, 789, 1008
Couldn't classify 129, 248
Couldn't classify 878, 1008
Sorry, prediction GeneMark_model.110976_t fails validation.
(AGG)	 AG	129-248	GT	ATG
(AGA)	 AG	616-768	GT	AGG
(AGT)	 AG	878-1008	GT	GGG
-recovered GeneMark_model.110976_t, internal, 129, 248
-recovered GeneMark_model.110976_t, internal, 616, 768
-recovered GeneMark_model.110976_t, internal, 878, 1008

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1028
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support